rs48293818 SNP Detail

Summary

• ID
  rs48293818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGTGAGC CCTGGATGGT GCCTATTGTT GGCTTTTTTG
  GAAATCTTTA TATATATATA TCCAGCAAGT GGCCTTTTTA GAATACTTTC ATAGCTTCTG
  Y
  GTTTGATCTT TGCCATCTTA CAGAGCATTA CTGTCCGGTT ATTTGAAGTT TCTGATTGTG
  TTTCACTGGG AACATCAGCA TGGCTTTTGT AAAACTCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147119860	ENSMUSSNP3327011	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48293818					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492249 () rs orientation: forward

Symbol	Name	Function Class
Gm57687	predicted gene, 57687	within coordinates
Rr561716	regulatory region 561716	1828 bp distal
Rr561717	regulatory region 561717	393 bp proximal
Rr561718	regulatory region 561718	968 bp proximal
Rr561719	regulatory region 561719	1992 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates