rs48293902 SNP Detail

Summary

• ID
  rs48293902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGACAAA GATAGAGGAG
  GTGGTAAAGA CGCAGTTTGG GAGAGAGGGT CTGTGTTGAG AAGGAGATGA AGGAGGGTCC
  TCCTCTCTCT TCTACAGCAA GAAGTGTAGC AGCCGTCTCT GCATGGAAAG AGTGGGAGCC
  CAGGGAAAGC CACCTTCAAA AGGAGTTTGG AAAACATTAT TCTTCCTGAC TGGAGTCCTG
  W
  AGGAACCTCA TTAGGCCTGC TGACCAAACG AGTACCTCCC TGGTCAGTCG CCTGCCGCTT
  AAGTCATTTG CTTAAAACAG GAATGTGTGG CTGAGCAGAG AGGAAAGGCA CTGAGTTTGG
  AGGGGAATGG AGAGGGAGTT GGTGCAGGCA GGGCCTGAGT GGCCAGCATA CTCACAAGCC
  CTTAGATTGT ATTAGTGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803581	NES16473391	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48293902					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803581	NES16473391	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718007 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1810 bp upstream
Rr419276	regulatory region 419276	1976 bp distal
Rr419278	regulatory region 419278	1119 bp distal
Rr419279	regulatory region 419279	1301 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	243 bp distal
Rr419282	regulatory region 419282	1968 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron