rs48294169 SNP Detail

Summary

• ID
  rs48294169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76474613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTTGTA GAGGAGAATG
  AGAAACCTGG CAGGAAAAGA ATCTTCTCGT GAGGTTGGCT GCAAAAACAA AATACAAGAA
  AAAAGAAAGA AACAAACAAA CAATAAAAAC AACAACAAAC CCCTGATGTC ACTTTAGCTG
  CCTGTCCACA CAGCAGCTAA AATGACCGCA GACTTATGCC AATGTGAATA TGCCTCAGAG
  R
  TGGATTATTG AGTGGAAAGA AGATGCAGAG GGACTACCAG TTGGGTGGCA TTTTATCAAG
  TTTTAAACAT GCAATGAAAG GTGGATATAA AAGGTGTATG GATACTCTAT ATATTTTTTA
  TAGATAGAAC AATATATTAT AGATTGGATT TTTTTAAAGT TTTATTTTAT GTGTATGGAT
  GTATGGCTTG CATGTATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63183986	NES17459534	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	G	G	G	A		A	G	A	G		G
ss147535815	ENSMUSSNP5163887	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325700417	CHEV_18_76501196	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48294169					SNP	A	A	A	A	A	A	G	G	G	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183986	NES17459534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76474613 () rs orientation: forward

Symbol	Name	Function Class
Rr347326	regulatory region 347326	613 bp distal
Rr355557	regulatory region 355557	1614 bp distal
Tssr151998	transcription start site region 151998	1513 bp upstream