rs48295464 SNP Detail

Summary

• ID
  rs48295464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCCAAA CCAACAATAT
  GTTTATTTAA TTACAAACTA GTAAAAAAAA GTTCCTTAAA TGTTAAACCT TGAATGTATA
  TATTAAAATA ATAATGTCTT TCACTAAGTG TGGGGACTCT ATAACCTCAG CACTCAGAAG
  ACTGAGGCAG GATTATAACT TCAAAGTCAG CAGGGCCTAT AAAGCAAGAC TTCTCTCTCC
  Y
  GCCCTCCCCC AGGGAAAAAC AAAAAAAGAA ATCCCTCTTT CTGTGTGCAC ATATATGTAT
  GTATTTATGT ATGTGTGTAT ATATGTATGT ATGTAATGTA TGTATATACT AATAGATTTC
  TCTTAGTTCC CTCCTTCCCG ATTTTGCTGC TGTTGTTTTC ATTCTGTAGC CCAGGCTGTC
  CTGGAGCTCA CTCTATAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148092186	ENSMUSSNP6743931	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320584253	CHEV_2_156941019	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48295464					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957203 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	323 bp distal
Rr568436	regulatory region 568436	1671 bp proximal
Rr568437	regulatory region 568437	1844 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27142	transcription start site region 27142	1878 bp upstream
Tssr27143	transcription start site region 27143	957 bp upstream