rs48295540 SNP Detail

Summary

• ID
  rs48295540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62397483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC AGGTCCCACT CTGGGCCGAA
  R
  GAATCCACTG CAATCTTTTA GCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136550950	ENSMUSSNP5562655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss322982754	CHEV_9_62338008	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48295540					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62397483 () rs orientation: forward

Symbol	Name	Function Class
Coro2b	coronin, actin binding protein, 2B	within coordinates
Cpgi21898	CpG island 21898	1173 bp distal
Rr368794	regulatory region 368794	1163 bp downstream
Rr680797	regulatory region 680797	1179 bp distal
Rr680798	regulatory region 680798	960 bp proximal