rs48295874 SNP Detail

Summary

• ID
  rs48295874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTTCAG GACATTCACA
  GACACTCGCA CACCCTCGGT CTGCAGAGAA GGAGGCATCC TCTTTCAAAC TCAGCTCTCT
  GTTCCTCAGA CACATGACTC TACAGACTGC AGGCTGAGCT CTGCCCTGTG CCGTCCATCC
  TGGCCAGCCA GGACACTGTC TGTGCTTCTC CTTGTGAGGG AACAGGCCAA GTTTCTAGAA
  R
  TGACTGACAC TGTCCGGTCC GAGGCTTGAA GAAGCTCGCT CTTGGAAGAA CGGGTATACA
  GAGCAGCAGA ACCCAGGCAA CAGCAGGGAT ATGCAGCGGA GACCTTAGAA GGTTCCAGGA
  TAGCCCACAT GCACACACAT GTTATAGACA CGTGTCTACA CACGTCCCTG TGCACACACT
  GTCACGGGAG ATCAAGACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420903	ENSMUSSNP2724617	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48295874					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864705 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	694 bp upstream
Cpgi21698	CpG island 21698	1026 bp proximal
Rr678012	regulatory region 678012	204 bp proximal
Rr678013	regulatory region 678013	1560 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1920 bp upstream
Tssr89292	transcription start site region 89292	523 bp upstream
Tssr89293	transcription start site region 89293	266 bp downstream
Tssr89294	transcription start site region 89294	1559 bp downstream
Tssr89295	transcription start site region 89295	1763 bp downstream
Tssr89296	transcription start site region 89296	1789 bp downstream
Tssr89297	transcription start site region 89297	1819 bp downstream
Tssr89298	transcription start site region 89298	1846 bp downstream
Tssr89299	transcription start site region 89299	1872 bp downstream