rs48298459 SNP Detail

Summary

• ID
  rs48298459
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53616288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCATTA GGGATGGTTG
  TGAGCCACCA TGTGGTTGCT GGGATTTGAA CTCAGGACCT TCAGAATGAA GAACAGTCAG
  TGCGCTCTAA GCCATCTCTA CCTACTAAGC CATCTCATCA GCCCCGATCA TATGATTTTT
  AAAGAAACAA TTCCCTACAT TATCAGCTTT CTTACTTTGC TCTAGAACAA AGTACTCTTC
  K
  ATCTCAAAAA CTGGAAATAC GCTTTAAATG TGATTTAATC TCAACTATCC AAGGAATTCA
  GTTTCATTTA CTTTTTTTCT GTAAGGCCAG TCGACTTTAT ACAATCTTTC AGGTTCCCCA
  GTAAACAACC AGAATGAGAC TATTTACTTG AGACTGACTC TCTCCCCATT TAGAAAAGTG
  CTTTCTTCTG TTGTCACATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss136502103	ENSMUSSNP5598103	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48298459					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53616288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21758	CpG island 21758	602 bp proximal
Rab39	RAB39, member RAS oncogene family	within coordinates
Rr401371	regulatory region 401371	1231 bp upstream
Rr679060	regulatory region 679060	757 bp proximal
Rr679061	regulatory region 679061	1234 bp proximal
Tssr89614	transcription start site region 89614	1223 bp downstream