rs48298974 SNP Detail

Summary

• ID
  rs48298974
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75547776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCCCTG GGAGAACCCT
  CCACCTCCTG AGGCTTCTCA ACGGTGGAGG AGCTGCGGGA GGAGGGGGGG CGGGGGGGGA
  AGCCTAGCAG CTGGAGAGGA GGGAGTGGCT CCAGTTGAGG GAGGGCAGGC CACCCGCTTC
  TGGGGTGGGC ATCAAGTCCA GCTGAGGTGG TGGCCCATGG GGAAACCCTC TCCTAGGACG
  W
  GAGCTCTGGC TTGATCCCTA AACAACTTCT ACTTCTGGGA ATTTGGGGTG GATGGGAGTT
  GGAGAGATGG CCCCTCCCTG TCTGCAGAAT TCCCTCTGAA CCGTTTGTCC TCCAAAGCAC
  CTGTAACACG TAGCTGGGAT TTGAGGTCAC CTGAACTAAC CCACTCCTGT TCTCTGAAGA
  GGAAGCAGTC CTGAGAAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132438941	ENSMUSSNP3974133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48298974					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75547776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3273	CpG island 3273	363 bp distal
Myo1c	myosin IC	within coordinates
Rr451247	regulatory region 451247	1067 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	1175 bp downstream
Tssr103027	transcription start site region 103027	1094 bp downstream
Tssr103028	transcription start site region 103028	1032 bp downstream
Tssr103029	transcription start site region 103029	1013 bp downstream
Tssr103030	transcription start site region 103030	950 bp downstream
Tssr103031	transcription start site region 103031	913 bp downstream
Tssr103032	transcription start site region 103032	773 bp downstream