rs48299046 SNP Detail

Summary

• ID
  rs48299046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126422435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCTCTT GCTTAATACT
  GTACTGGGAA AATGCATACA AGCTCCACTA CTCATCTACT CATCTGGCCA GAGGCTGTGT
  CTTCTGCGCA GTTTATTAGA GCCCCATGGT GCTTATCACA GTGCCAGGTA ACTCTGTGAA
  TATCAAAGGC TCCAAGTCGT GATTCTCAAG TTAGTATCCA AAATGGCAAA CATAGTTTCA
  R
  AGCAAGGTGG GTTTCCACTT ACAGTAGATA CTGTAAGTGA TGGGCAAGAC TGGTGCCCTA
  TTAAGAAAGT TTTCCTAATA TTAGCTACTT TTGAATCTTT GTGCATGTGT TTGTGTGTAT
  ATGATATACA TGTGCATATA TGTGTGAGAG TGCATCTGCT GTGGAGTGTG TATAGGTCAG
  AGGACAAACT CAGGTATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60794523	NES16466542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48299046					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794523	NES16466542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126422435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	1867 bp distal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	1967 bp distal
Rr417491	regulatory region 417491	1463 bp distal
Tssr13401	transcription start site region 13401	1974 bp upstream
Tssr13402	transcription start site region 13402	1894 bp upstream
Tssr13403	transcription start site region 13403	1850 bp upstream
Tssr13404	transcription start site region 13404	1824 bp upstream
Tssr13405	transcription start site region 13405	1747 bp upstream