rs48299388 SNP Detail

Summary

• ID
  rs48299388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:40506316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGTTCTG TATGCACTCT
  GGGATTTTAG GGGTGTGTCT TGGTGGGGTT GGGGCCAGAG ATTGATAGGT CACACTATAT
  CAGGACATGC CCTATGTTTC TGGCTCTCTT TCCACTCCAC TGGCAGCTGG TTATTCTTAG
  CCACAGATTG CTTTTCACCC TAGTGTTAAC TTATTAGAGC TGTGGCGCAA GGCTGCTAGA
  Y
  AGGCAACTAG TAAGATCATG GCCGTCTGTC TTCTATTACC TCCTCTGGAA ACAAGTCCAG
  GACCTCCCTC TCCCAGCCTT CCCCACTGGA CTGTGTCCTG CTGGGAATCT TCTCTTGTCT
  TTCTTCAACC CTGGCAGTCT GACATCTCAG CTCACCTGCT CAGAAACGCA CACGGCTCAG
  TTGGAGGAGA AGCGCACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273390	NES16894428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48299388					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273390	NES16894428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40506316 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddo	D-aspartate oxidase			Intron
				Noncoding-Transcript-Variant
Rr430230	regulatory region 430230			872 bp distal
Rr430231	regulatory region 430231			1009 bp distal
Rr430232	regulatory region 430232			960 bp distal
Rr430233	regulatory region 430233			233 bp distal
Rr430234	regulatory region 430234			within coordinates
Tssr93026	transcription start site region 93026			267 bp downstream
Tssr93027	transcription start site region 93027			257 bp downstream