rs48299466 SNP Detail

Summary

• ID
  rs48299466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20819071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGATTT TTATTTATTT
  ATTTATTTAT TTATTTATTT ATTTGGGGGG GGGAGCAGAT TGGGTATCTC TTTTCAGACT
  TCTCAGTTCA GTTCCATGTG ATGTAGTTAG GAGAGATAGT TGCTCTGGAA ACAAACCAGA
  GCTGACTTTG TAGATTGCCA TTTGATTGCT GAATGGCTTG GGAGATTGTG GTAAGAATTC
  R
  AGACCACAAA AGAGAAGACA CATTATTTTC ATTACTGATG GTTGGTCAGA CCATTTCCTC
  AAGGCCAGGG TGCCACAGCC CACAGGCTTA GAGAATTGCT CTAAGTTCAC GTTGAAACCT
  AGGCAATTCC CCATCTGCAA ACCCCACAGA CATAACAAAT GAGACTGCCA AAAAAACGAT
  TGAAGAGCCT CAAGTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757501	NES17681601	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48299466					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757501	NES17681601	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20819071 () rs orientation: forward

Symbol	Name	Function Class
Rr275299	regulatory region 275299	530 bp proximal