rs48302019 SNP Detail

Summary

• ID
  rs48302019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161805452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTTGCT TTCTACGGTG TTCAGGCAGG AGAAAATACT
  GAGCCCGAGA GCCTGAAAGA TTAGCTTTCA GCAGTGTACA GCAGTTCAAA ATGGTACTTT
  W
  AAAAAAACGT GCGGGGGCAG ACCCTCCTCG GCGTCTTCTT GGTGTCTGTC TTTCACATTT
  CAAAGGCTCA ATGATGACTT CCTTGCATTT GTTCATGGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145926337	ENSMUSSNP3775086	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48302019					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161805452 () rs orientation: forward

Symbol	Name	Function Class
4930558K02Rik	RIKEN cDNA 4930558K02 gene	Intron
Gm38304	predicted gene, 38304	within coordinates
Rr396470	regulatory region 396470	1139 bp downstream
Rr421879	regulatory region 421879	788 bp distal
Rr421880	regulatory region 421880	1328 bp distal
Rr421881	regulatory region 421881	1262 bp distal
Tssr14608	transcription start site region 14608	1773 bp downstream
Tssr14609	transcription start site region 14609	1801 bp downstream
Tssr14610	transcription start site region 14610	1817 bp downstream