rs48302224 SNP Detail

Summary

• ID
  rs48302224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49013144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTGGGAC CTACCCAAGT
  GACTTGGGGA TAGGATAGTG GGAATGGGAG GGAAACATTC CACTCACTGG AAGCAGACTA
  GGGGAAAGTA TGGCAGTGTG GGAAGAGTAT GAAGTACTGA AGGAGCTGAA GAAAAATTCA
  ATGTGGTATA CACAGTGTAT ATTCAGACAG GGACAGCAAG ACACTGTGCA AGGAGTGCAG
  Y
  TTCCTGTGCT AATTCCAGAT CTCTTAAGAG AAAGAACCAA ATTTTGTCCC TTTCATGAGT
  TAATGAATAC CTGAGGGCTG AATATAAATA ATGAAGTTTA ATGTTTGAAT GGACAAAACT
  CATGGGGGTA AAAAATGTTT ATAGAAGTCC CTAAATATGA TCAAGCCTTT TATTATTGAG
  GTAGGGAATA GAAAAACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62763221	NES17343742	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48302224					SNP	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763221	NES17343742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49013144 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	196 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	196 bp proximal
Rr392702	regulatory region 392702	838 bp upstream