rs48303387 SNP Detail

Summary

• ID
  rs48303387
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AACACTCATC CTGAGTAACA
  T
  TGAAAGTATG GACGGTGGGT GAGAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149092868	ENSMUSSNP4620824	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322575035	CHEV_8_35169497	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48303387					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1672 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1903 bp upstream
Rr661952	regulatory region 661952	460 bp proximal
Rr661953	regulatory region 661953	892 bp proximal
Rr661954	regulatory region 661954	1399 bp proximal
Rr661955	regulatory region 661955	1408 bp proximal
Tssr80889	transcription start site region 80889	1319 bp downstream
Tssr80890	transcription start site region 80890	1373 bp downstream
Tssr80891	transcription start site region 80891	2000 bp downstream