rs48303543 SNP Detail

Summary

• ID
  rs48303543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146203948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAATTT TTTAGAACCA
  AGTCCAGGGC CCATTTTGAT AACAAAGTCT ATCTTTAATC ATCTAATATG TAAACACATG
  GTAAAGCCTT TGAAATATTT TAGAACATCG TGGAAGGTTA AAAAAGCTTT TACTAGGAGA
  TATTGATAGT TCATGAACTG TATGTAATAC TCATATCTTC GAATGTAAAT GAATTTAAAG
  R
  CAATCTTATT TTCCTTCCTT TCTATCCCAA TATGTATTGC TTATTTGACA TACCATAAAA
  CTATGATAGC ATCTGGTGTG TGAGACAGCA ATACACTCTG GTTTCCTAGC TCAATAGTTT
  GGGGAAAAGA AAACAATAAA CTTTCTGAGA CTAAGACAAA TTTGTTTATT CCTCAACATT
  TCCTTAATAA TGGGTTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136044813	ENSMUSSNP3255493	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321010533	CHEV_3_146161157	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48303543					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146203948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	1144 bp proximal
Gng5	G protein subunit gamma 5	1643 bp upstream
Rr77342	regulatory region 77342	452 bp proximal
Spata1	spermatogenesis associated 1	within coordinates
Tssr32351	transcription start site region 32351	1512 bp upstream
Tssr32352	transcription start site region 32352	1635 bp upstream
Tssr32353	transcription start site region 32353	1657 bp upstream
Tssr32354	transcription start site region 32354	1878 bp upstream
Tssr32355	transcription start site region 32355	1938 bp upstream
Tssr32356	transcription start site region 32356	1968 bp upstream
Tssr32357	transcription start site region 32357	1996 bp upstream
Tssr36036	transcription start site region 36036	1528 bp downstream
Tssr36037	transcription start site region 36037	1614 bp downstream
Tssr36038	transcription start site region 36038	1895 bp downstream