rs48304242 SNP Detail

Summary

• ID
  rs48304242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99882915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAATATA TCCTTTATAT
  ATTATATGTA GCTTATATAT AATATATATG ACATATAATA TAATCTTTAT ATTATTTGTG
  ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATTT
  CTTGCCAGGA ATCGTTGTGC ATGCTTTTAA CCCCAGCATT AAGGAGGCAG AGGGAGGCAG
  R
  TGAGTTAAAG GCCTATATAA CCTATATAGG GAGTTCCAGG CTAACTGGGG CTATGTAGTG
  GGACCCGGTC ATTGCTCTGT AAAAGTAAAA ATAGATACTG TTCCCTTAGT GCAAGAACAG
  ATTTTATTAA TTTTAACCCA TGTGTCACTT AAAATCATTC CTAACTAGGG ATTAATCCAC
  TCTTATATGA GTCTTCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716353	ENSMUSSNP616013	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323830201	CHEV_11_99853403	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48304242					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99882915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1452 bp proximal
Krtap17-1	keratin associated protein 17-1	1145 bp downstream
Tssr110721	transcription start site region 110721	1903 bp downstream