rs48304445 SNP Detail

Summary

• ID
  rs48304445
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102378460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT TGCCCCCATC CTCCCAGAGT
  S
  CTCTCTGGCA GTACCAGTCT ACTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135556854	ENSMUSSNP768307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320855708	CHEV_3_102275067	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48304445					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102378460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	544 bp distal
Ngf	nerve growth factor	Intron
Rr582236	regulatory region 582236	1206 bp distal
Rr582237	regulatory region 582237	494 bp distal
Tssr30928	transcription start site region 30928	1501 bp downstream
Tssr30929	transcription start site region 30929	1232 bp downstream
Tssr30930	transcription start site region 30930	1212 bp downstream