rs48304636 SNP Detail

Summary

• ID
  rs48304636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79626251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGATAAA AGTAACAGAA AAAATATTGA ACCATATGAA
  TAAATTAAAT AGCTATGTGG CCAAACCTGG TGGCTCGTTC CCTATAATCA ATCAATCAAC
  S
  CCAGTCCTTA GGAAGTTAGA TGAGGCAAAA GGCTGCCATG AGTTCTAGGC TAGCCTAGAT
  TATACAACCT ACTGTGGGCT GGAGTGAAAC TCTGAAACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139812865	ENSMUSSNP129031	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48304636					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79626251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	1282 bp proximal
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	1835 bp upstream
Rr496090	regulatory region 496090	708 bp proximal
Rr496091	regulatory region 496091	1892 bp proximal
Rr496092	regulatory region 496092	1957 bp proximal
Rr496093	regulatory region 496093	1980 bp proximal
Tssr129900	transcription start site region 129900	606 bp downstream
Tssr129901	transcription start site region 129901	1828 bp downstream
Tssr129902	transcription start site region 129902	1855 bp downstream