rs48304878 SNP Detail

Summary

• ID
  rs48304878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28684993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCATGGC CTGGGTATCT CTGATGTAAG GCTCTTCTCC
  AAATTCAAAA CTTTCCAACA CTATGAAATT GACCAAAAAA CTCAATAAAA TTAACACTCT
  Y
  CCTGGGTGGC TGAGCAGTGG TAGTTCAGGG CACAGGACCC AGGTTCAGTT CCCAGCACTC
  ACAAGCATTT GTAATTCAAG TTTCAGGAAC ACGCAAGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52348249	NES15378147	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	T	C	T		C	T	T	C		C
ss137502186	ENSMUSSNP256446	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss323971710	CHEV_12_29319859	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48304878					SNP	T	T	C	C	C	C	C	C	T	C	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348249	NES15378147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28684993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	271 bp proximal
Gm53713	predicted gene, 53713	1075 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	803 bp upstream
Tssr116014	transcription start site region 116014	239 bp downstream
Tssr116015	transcription start site region 116015	838 bp downstream
Tssr116016	transcription start site region 116016	849 bp downstream
Tssr116017	transcription start site region 116017	873 bp downstream
Tssr116018	transcription start site region 116018	897 bp downstream
Tssr116019	transcription start site region 116019	920 bp downstream