rs48305477 SNP Detail

Summary

• ID
  rs48305477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:109077548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCATTTTA GTTTATGATT
  TAGATGGCCC AGACACTCCT AGAATTAAAT ATTATTTGAG ATGATTATGT ATTTATTACA
  TGTAGAATGT CTAACTATGA TGCATGGAAT CATTAGCACA GCTACATAAT ATCAGTCATC
  TAGAGAAGCT GGCATTGTCT CAAATATGCC ACTCATTTTT ATTATTTCAG TTATACAACT
  M
  GTTTATATTT GATGTTTTTA TAAAAAACAA TATAGAACTT CTAATCTCTT TTCTGTCACA
  ACATTTGGGT CCTTATCTTA CACTGCTTTC AGGTCAAGAT ACATTCATAT TTCAAAATGA
  TAGTTATAAA CATTTGTATG CTATTTTTTA ACTATATCAT AGAAAGAATT TGGGATTTTC
  CCTGTATTCT TTTTTTTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146796919	ENSMUSSNP2039589	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324806631	CHEV_14_109239333	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48305477					SNP	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:109077548 () rs orientation: forward

Symbol	Name	Function Class
Tssr130175	transcription start site region 130175	1915 bp downstream