rs48305850 SNP Detail

Summary

• ID
  rs48305850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165066261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC AAAATAATGT GATTCTTTTC
  Y
  GGTTAACAAG TTATCTACTT ATATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145997583	ENSMUSSNP6975945	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320086591	CHEV_1_167168823	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48305850					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165066261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	1283 bp distal
Rr372385	regulatory region 372385	694 bp downstream
Rr422343	regulatory region 422343	1760 bp distal
Rr422345	regulatory region 422345	1259 bp distal
Rr422346	regulatory region 422346	1732 bp distal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	1696 bp upstream
Tssr14765	transcription start site region 14765	1736 bp upstream
Tssr14766	transcription start site region 14766	1701 bp upstream