rs48306038 SNP Detail

Summary

• ID
  rs48306038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGAAAAG TTTAGCCGGG
  CATAGTGACA CACATTTTTA ATCTCAAGAC TCGGAAAGCA GGCTCTGAGT TACAGGCTAG
  CCGTTTGTTA CATAGTCGAG GGGCTTAATA TCCATCCATG TGGGGCCAAG AAGAGGCCAG
  GAGGGCTTTT CTTAAGTAGT CACAAAGCTA GGTGACTAGT TGTGAATGAT GTAGAGTCTT
  R
  TAGTGCAGAC TTGCCGTGTA TTAAGGATGG TCTTGAACTC CCCCTTGCCT GGGCCTCCCA
  GGTGCTGGTG TTTACAGGCG CGAGCCATAC ACCAGGCTTG AGTAAGCTGC TCAGTATGGA
  ATCCAGCTGT GTCTGAGTTC TACAATCCTC CCTGATTCTC TGGGGCTTCT AATTTAAGCC
  TCTCTACCCG TGACTACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394048	NES16775907	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48306038					SNP	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394048	NES16775907	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407540 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	within coordinates
Cpgi21716	CpG island 21716	220 bp distal
Gm5617	predicted gene 5617	268 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	941 bp upstream
Rr195326	regulatory region 195326	461 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	722 bp downstream
Tssr2862	transcription start site region 2862	342 bp upstream
Tssr84988	transcription start site region 84988	1183 bp downstream
Tssr84989	transcription start site region 84989	1125 bp downstream
Tssr84990	transcription start site region 84990	1020 bp downstream
Tssr84991	transcription start site region 84991	974 bp downstream
Tssr84992	transcription start site region 84992	840 bp downstream
Tssr84993	transcription start site region 84993	789 bp downstream
Tssr84994	transcription start site region 84994	330 bp downstream
Tssr89390	transcription start site region 89390	1832 bp upstream
Tssr89391	transcription start site region 89391	1813 bp upstream
Tssr89392	transcription start site region 89392	1783 bp upstream
Tssr89393	transcription start site region 89393	1251 bp upstream
Tssr89394	transcription start site region 89394	967 bp upstream
Tssr89395	transcription start site region 89395	922 bp upstream
Tssr89396	transcription start site region 89396	905 bp upstream