rs48306250 SNP Detail

Summary

• ID
  rs48306250
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47749042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCACCAG CAGGCAAGCA
  AAACTAAGAG TATGCCCTCC TGCCCTTTGG GGGCCTCTGC TGGAAGACAG CCTTTAGGTG
  CATGAGAAAG AGAAGAGGCA TTTCTGAGGG GAACCTAGCC TCAGAGTGGA GAGGGAAGGC
  TGTCTCTGAC AGAGCACAGG TTTCAGTAAT GGGGAAGAGA GCAGGACCAA GTGGGGGCGT
  G
  TCTAGGCAAA GAAGATACCA GTGCTGGCAA GTGAACCCTA AGTGTACTCT GGGATGCCCC
  AACACCTTCC TTGGCCTGAA GGAAGACATC AATAGCAAAC TGTCACCCAC CTTTCCTAGG
  TGCAAACTCT CCTAAAACGT TTGATCTTTG ACTCACTGAG TCTCTGTCTA GTGTAAGATG
  CTATTATTGG CTTTCTGGAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145706748	ENSMUSSNP6093977	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48306250					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47749042 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	within coordinates
Cimip3	ciliary microtubule inner protein 3	741 bp upstream
Cpgi9259	CpG island 9259	725 bp distal
Rr339933	regulatory region 339933	within coordinates
Tssr144911	transcription start site region 144911	1522 bp downstream
Tssr144912	transcription start site region 144912	1509 bp downstream
Tssr144913	transcription start site region 144913	1478 bp downstream
Tssr144914	transcription start site region 144914	1459 bp downstream
Tssr144915	transcription start site region 144915	1374 bp downstream
Tssr148437	transcription start site region 148437	870 bp upstream
Tssr148438	transcription start site region 148438	726 bp upstream