rs48306376 SNP Detail

Summary

• ID
  rs48306376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:35500118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAAAGG CTCTAATTTT
  CTGGGTATAT ACAAAGAGAG AAAGACGATA TAAAGAAATC TTCTTTTAGA GTATGCATTT
  CGTTTTTCCA ACTAAGTAAA TAAACAAACA AAACCCCACA CCAAAACAAC AGAAGCGATG
  GCCAATGAAT TTCACACTCT TTCAGACATC TGTTTTAGCC AAAAGAAGGT AGGGTTCCTC
  Y
  GTTCTCTGAA GTGCCCTGGC TGCATGATCC AGGCGAGTCA CTCTTTGTTT TAGCTTCTTC
  TGGTGTGAAA TGTGAGGGGA AAGCTGGATG AACTTTTAGA GATGGAATCA CAAACTGCCT
  ATTAAAAGTA ACCTAAAAGC TAGTTTTACT TCACATCTTA CAAAGGTCAG TTACAATTTA
  TTTAAAATCT TCTCAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	NOD/ShiLtJ	PWD/PhJ
ss60995116	NES16129137	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	NOD/ShiLtJ	PWD/PhJ
rs48306376					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60995116	NES16129137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35500118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18877	CpG island 18877	1680 bp proximal
E130304I02Rik	RIKEN cDNA E130304I02 gene	1899 bp upstream
Gm73276	predicted gene, 73276	689 bp downstream
Rr645475	regulatory region 645475	1493 bp proximal
Rr645476	regulatory region 645476	1910 bp proximal
Zfp507	zinc finger protein 507	Intron