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rs48306376 SNP Detail
Summary
  • ID
    rs48306376
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:35500118 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAAGAAAGG CTCTAATTTT
    CTGGGTATAT ACAAAGAGAG AAAGACGATA TAAAGAAATC TTCTTTTAGA GTATGCATTT
    CGTTTTTCCA ACTAAGTAAA TAAACAAACA AAACCCCACA CCAAAACAAC AGAAGCGATG
    GCCAATGAAT TTCACACTCT TTCAGACATC TGTTTTAGCC AAAAGAAGGT AGGGTTCCTC
    Y
    GTTCTCTGAA GTGCCCTGGC TGCATGATCC AGGCGAGTCA CTCTTTGTTT TAGCTTCTTC
    TGGTGTGAAA TGTGAGGGGA AAGCTGGATG AACTTTTAGA GATGGAATCA CAAACTGCCT
    ATTAAAAGTA ACCTAAAAGC TAGTTTTACT TCACATCTTA CAAAGGTCAG TTACAATTTA
    TTTAAAATCT TCTCAGCTCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
NOD/ShiLtJ
PWD/PhJ
ss60995116 NES16129137 PERLEGEN MM_PANEL2 f SNP T T C
SNP Consensus Information
SNP Consensus Type
AKR/J
NOD/ShiLtJ
PWD/PhJ
rs48306376 SNP T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60995116 NES16129137 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:35500118 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi18877 CpG island 18877 1680 bp proximal
E130304I02Rik RIKEN cDNA E130304I02 gene 1899 bp upstream
Gm73276 predicted gene, 73276 689 bp downstream
Rr645475 regulatory region 645475 1493 bp proximal
Rr645476 regulatory region 645476 1910 bp proximal
Zfp507 zinc finger protein 507 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory