rs48306552 SNP Detail

Summary

• ID
  rs48306552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGCCTGC AGGGGTGAGT
  GACCAGCTGG CTTGGGGATT GCGAGACTGG GAGCTGGGTA CCACACAGCA CAGCCTCTGC
  AGCATCCATT GGCAGTGTGA CCATAGGCGT TACTGATGAC GTCTCCACTA TTTTCCTTCA
  TCTGTAAAAG AGGGATAGCA TCGCGGCTAG CTTAGATCTA GAGCAGTGCC TGGTAATACT
  R
  TACAACTTAG AGCGGGCTTT GGAGCCCCGA GTGGAGTCGA GGGAACTCTG GCTCTAGTAA
  TTGGAGAAAG GGCAAAGACT TGAGGCCAGT GCGTCCGGAA GCTAAAGTTT GGAATCTTAA
  ATGAGGATGG ATGGAGGAGG GGGACAGAAA CAAGGGGAAG TCTAACTCTG ACCCTGGAGA
  GAGTAGAGAG TGGGTCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002542	NES16125136	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G	G	A	G	G
ss149150508	ENSMUSSNP3001337	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48306552					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002542	NES16125136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	437 bp proximal
Cpgi19110	CpG island 19110	1437 bp proximal
Emp3	epithelial membrane protein 3	1125 bp upstream
Gm45442	predicted gene 45442	within coordinates
Odad1	outer dynein arm docking complex subunit 1	1543 bp upstream
Rr368318	regulatory region 368318	227 bp upstream
Rr368319	regulatory region 368319	447 bp upstream
Rr400324	regulatory region 400324	887 bp downstream
Rr400325	regulatory region 400325	828 bp upstream
Rr646609	regulatory region 646609	658 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	653 bp proximal
Rr646612	regulatory region 646612	1737 bp proximal
Tssr2257	transcription start site region 2257	311 bp downstream
Tssr2258	transcription start site region 2258	1580 bp downstream
Tssr66661	transcription start site region 66661	672 bp upstream
Tssr66662	transcription start site region 66662	1005 bp upstream
Tssr66663	transcription start site region 66663	1673 bp upstream
Tssr72492	transcription start site region 72492	1893 bp upstream
Tssr72493	transcription start site region 72493	1861 bp upstream
Tssr72494	transcription start site region 72494	1851 bp upstream
Tssr72495	transcription start site region 72495	1835 bp upstream
Tssr72496	transcription start site region 72496	1749 bp upstream
Tssr72497	transcription start site region 72497	1646 bp upstream
Tssr72498	transcription start site region 72498	1402 bp upstream
Tssr72499	transcription start site region 72499	1217 bp upstream
Tssr72500	transcription start site region 72500	1082 bp upstream
Tssr72501	transcription start site region 72501	659 bp downstream
Tssr72502	transcription start site region 72502	890 bp downstream