rs48307097 SNP Detail

Summary

• ID
  rs48307097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105050786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACACTT TAAACACTAA
  CCACTTCTCT CCTCCTTTCT GTTGACAGGT TCAAATTCCA TTTCTTCTTT CTTCTCTAGA
  CTCTCCTTTG CAACTGGGAA ATTTAGCTAT GATCCTCAAA TATTTATTCT AATAGGCTGT
  CAGTAGTCTA ATCCTTAAAT AGCTAGGAGC GGGGCATCAC TGCAAATGGA ATGTTAAGGC
  R
  CAAGGAAGGC AAGTGACTCA GTTCAAGTTA TCTGACAATT AATGTGCAGA AGGCTCAACC
  GAGAGCTACC CAGGTGTGAA GTTGAAAAGC ATTTTGATAA ATACCTTCCA CGGAGTGAAG
  GCAAGAGCTG TGTCATTCAA TAAAGCAAAT GATTTCCTCA GGGAGAAAGC ACACAGCGGG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52689539	NES15529101	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48307097					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52689539	NES15529101	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105050786 () rs orientation: forward

Symbol	Name	Function Class
Gm41048	predicted gene, 41048	477 bp upstream
Gm60378	predicted gene, 60378	within coordinates
Rr389010	regulatory region 389010	1458 bp downstream
Rr389011	regulatory region 389011	1686 bp upstream