rs48307294 SNP Detail

Summary

• ID
  rs48307294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:121331990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCACCCC CCCAGCCATG
  TCTCCTACCT GCTTCCCTTG TGGTCTACCT GTGTCCTCAC ACCAATTCAC GCTGCACTGG
  TTCAACACTC TCCTGTCTAC CCGTGCCCTC TCCCCTACCC ATTCTGGGTT ATCTGAGCTT
  TCTCCTAGGC AAACACATCT CCACCCTCAT CTTTAGATGG TAGCATGCTT CCATTACCTC
  Y
  CTCTGGTCCT GTGTCATGCA TGTGTCTATC CAGTCCCCCT CTGTGGGATT ACAATGGTTT
  GGTCTTCTAA CAGCCAGGGA CACTCAGACC ACAGGTGGGA ACATGGCATG ACCATGGAGA
  GGCTGGGGAG GGCAGGGATG GGGTAGCCCT GGAGAGTGTC ATCTGTTGGG TCATCTCTGA
  ATCAGGGGAC TTGGTGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60935904	NES16198329	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48307294					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60935904	NES16198329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:121331990 () rs orientation: forward

Symbol	Name	Function Class
Slc6a12	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	within coordinates
Tssr58613	transcription start site region 58613	1370 bp upstream
Tssr58614	transcription start site region 58614	1758 bp upstream
Tssr58615	transcription start site region 58615	1787 bp upstream
Tssr58616	transcription start site region 58616	1841 bp upstream
Tssr58617	transcription start site region 58617	1848 bp upstream
Tssr58618	transcription start site region 58618	1867 bp upstream
Tssr58619	transcription start site region 58619	1892 bp upstream