rs48308479 SNP Detail

Summary

• ID
  rs48308479
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG GATTTGACGA CCACAAAAAA
  A
  CAAAACCAAA ACCAAAAACA AAAAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139474652	ENSMUSSNP6022466	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48308479					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343094 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	1694 bp distal
Rr288977	regulatory region 288977	494 bp distal
Rr295428	regulatory region 295428	532 bp proximal
Rr299307	regulatory region 299307	1903 bp distal
Tssr125402	transcription start site region 125402	748 bp downstream
Tssr125403	transcription start site region 125403	596 bp downstream
Tssr125404	transcription start site region 125404	456 bp downstream
Tssr125405	transcription start site region 125405	229 bp downstream
Tssr125406	transcription start site region 125406	152 bp downstream
Tssr128409	transcription start site region 128409	230 bp upstream
Tssr128410	transcription start site region 128410	210 bp upstream