rs48309398 SNP Detail

Summary

• ID
  rs48309398
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAACAAT GGTTAAGAAA AAGTTGTATG GCTGGAGAGG
  TGGCTCAGCG GGGTTAAGAG CGCTGCCTGC ACTTCCAGAG GTTCTGAGTT CAATTCCCAG
  G
  AACCACCTGG TGGCTTACAA CAATCTGTAA TGGGATCTTA GGCCCTCTTC TGATGTGTCT
  GAAGACAGCG GCAGTGTAAT CATATACATT AAGTAAATA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146188006	ENSMUSSNP6314215	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48309398					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	50 bp distal
Gm70847	predicted gene, 70847	79 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1625 bp distal
Rr423526	regulatory region 423526	1889 bp distal
Rr423527	regulatory region 423527	715 bp distal
Rr423528	regulatory region 423528	1087 bp distal
Rr423529	regulatory region 423529	672 bp distal
Rr423530	regulatory region 423530	145 bp distal
Rr423531	regulatory region 423531	1213 bp proximal
Tssr15210	transcription start site region 15210	780 bp upstream
Tssr15211	transcription start site region 15211	767 bp upstream
Tssr15212	transcription start site region 15212	750 bp upstream