rs48309992 SNP Detail

Summary

• ID
  rs48309992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25783954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGATTC AGACAACCCT
  TGGCTGGATG CAGGACTGGC AGGGTTTGGG TCTACATGGA CAGTAGCCTT CGAAGACATC
  AGCCATCCAT GAACCTGGTT CTCACAGCAC CATCCTCAGA ATCCCCTACA CCTGGAAGCT
  TGGCACACTC AGACCTTACG AGCTCTTATA AACCCAAGTG ACTTTCTGAA TGCTGGTCTT
  R
  GCAGGCTCTA GAGTCAAGCT TCTTAAACTG GGGCAGTAAT AAATTAACAC ACACACACAC
  ACACACACAC ACACACCACA CACACACACA CACACACACA CCACACACAC ACACACACAC
  ACCACACACA CACACACCAC ACACACACAC ACACACACAC ACACACCAAA CACACACACA
  CACACACACA CACACACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552853	NES16573418	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48309992					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552853	NES16573418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25783954 () rs orientation: forward

Symbol	Name	Function Class
Rr523604	regulatory region 523604	176 bp distal
Rr523605	regulatory region 523605	222 bp proximal
Sox8	SRY (sex determining region Y)-box 8	911 bp downstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr146844	transcription start site region 146844	1037 bp downstream