rs48310172 SNP Detail

Summary

• ID
  rs48310172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42173573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACACAAC GACTGCTCCT GACACAACGA CTGCTCCTGT
  ACTAAGTAAA CTTTTACAGG CACGAAGTGG TAACCTAGTG CAGGTTGTTC AACTGCCCCC
  R
  CAGGTACCAA ACTGCTTCGT GCATCCTCAA ACAATGGAAG ACAGTGTCAA TCTCTCCACA
  ACCCCTGGAG TACCTTCAAC GCATCAGGGA AGAAAAGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136379301	ENSMUSSNP6970748	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48310172					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42173573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	1377 bp proximal
Rr401326	regulatory region 401326	1916 bp upstream
Rr677189	regulatory region 677189	1318 bp proximal
Rr677190	regulatory region 677190	1913 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr89017	transcription start site region 89017	136 bp upstream
Tssr89018	transcription start site region 89018	1927 bp downstream
Tssr89019	transcription start site region 89019	1949 bp downstream