rs48310858 SNP Detail

Summary

• ID
  rs48310858
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114633734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTTCCT TTGGTCTGTG
  CTCCACATTT TGTCCCCATA ATTCCTCCTG TGAGTATTCG TTTTCCTCTT CTAAGTGACA
  CAGAAACATC CACAATTTGG TCTTCCTTCT TTAACTTCAT ATGATCTGTG AATTTTATTT
  TTAGTATACT GAACTTTCTG GCTAATATCC CATTATTAGT GAGTGAACAC AATGTGTGCT
  A
  TTTTGTGACT TGGTTACCTC ACTCAGGATA CTTTCAAGTT CCATCCATTT GCCTGTGAAA
  TTCATGAAGG CATTTTTTTT AAATAGGGGA ATAGTATTTC ATTTTGTAAA TATACCACAT
  TTTCTGTATA CATTCTTCTG GTGAGGGATA ACTGGGTTGT TTTCAGCTTC TAGCTATTAT
  GAATATAGTG ACTATGAACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138795003	ENSMUSSNP5293512	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48310858					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114633734 () rs orientation: forward

Symbol	Name	Function Class
Gm46322	predicted gene, 46322	1109 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-17-1	immunoglobulin heavy variable V1-17-1	1854 bp downstream
Rr473858	regulatory region 473858	1529 bp distal