rs48310942 SNP Detail

Summary

• ID
  rs48310942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73189515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA AAAAAGCAGG CTGAACAAAC
  S
  ACGAGGAGCA AGCCAGTAAG CAGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146759694	ENSMUSSNP2085550	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320344960	CHEV_2_73197228	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48310942					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73189515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11773	CpG island 11773			1954 bp distal
Gm13703	predicted gene 13703			within coordinates
Gpr155	G protein-coupled receptor 155			Intron
				Noncoding-Transcript-Variant
Rr373357	regulatory region 373357			within coordinates
Rr559132	regulatory region 559132			1772 bp distal
Rr559133	regulatory region 559133			242 bp proximal
Rr559134	regulatory region 559134			343 bp proximal
Rr559135	regulatory region 559135			1459 bp proximal