rs48311445 SNP Detail

Summary

• ID
  rs48311445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58957008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTGGGA CAGATGCTGT
  CCCACACATG GCAAGAAGTC AGAGACCAGA GAGATGGGGT ACCTGTCACT TCTCTGTCTG
  TTTCACTGGC TTACGGATGT CAGTTGGTGA AGAGTGGGAC TCTAAAATTC CATATAGACA
  GAAATATAAT CATAAATTCG TATATATTAT GTTCCTGGGA AGGAATTCTG CGTGCATTTT
  Y
  ATTTCAAAGT TCTGATGGGT GTGTTTTAGG CTTTCAGTAT ACGATAATTA TATTGGAACA
  TTTTTGTTTG GTAAAATATA CTGTGTGTGT GTGTGTTGAG AGAAGTTCCA GTGATATTAA
  CCAGAAAGGA GGTTAAAATT ATTCATTTTC AAGAATTGGT TGGAGGAAGT GAGGGTCTCT
  CCCTTAACAT CTTTTCCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52643906	NES15465418	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48311445					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643906	NES15465418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58957008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	237 bp distal
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr281494	regulatory region 281494	within coordinates
Tssr120084	transcription start site region 120084	1494 bp downstream
Tssr120085	transcription start site region 120085	1356 bp downstream
Tssr120086	transcription start site region 120086	1311 bp downstream
Tssr120087	transcription start site region 120087	1292 bp downstream
Tssr120088	transcription start site region 120088	908 bp downstream
Tssr120089	transcription start site region 120089	442 bp downstream