rs48313054 SNP Detail

Summary

• ID
  rs48313054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:92897208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCTTCA GACACACCAG
  AAGAGGGCAT CAGATCCCAT TACAGATGGT TGTGAGCCAC CATGTGGTTG CTGGGAATTG
  AACTTAGGAC CTTTGGAAGA GCAGTCAGTG CTCTTACCCG CTGAGCCACC TCTCTGGTTT
  GATAACCCTC ATTCTTTACA TATGGCCCTC ACTTTGTATG ATTACTATTA AAATCAAGAC
  R
  GACACATTGG ATCACATGTA TTCACTGTTA AGTGATCCCC TACATACTCT TTGCGCAGCT
  CAGCACTCAG TGTGTGGTAT AGAAAGCCGG GAGGGAAAAG CGTTACATCC CATACCTTGG
  AAGACTGTCC TATGACCATC AGCTTCCGGC AAATGGTGTA GATGTAAAGG GTACCTGAGG
  AAGAGAAAGA TCGTCAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61303553	NES16913778	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	A
ss147336918	ENSMUSSNP67910	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48313054					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61303553	NES16913778	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:92897208 () rs orientation: forward

Symbol	Name	Function Class
Cfap54	cilia and flagella associated protein 54	within coordinates
Rr217502	regulatory region 217502	8 bp distal
Rr223960	regulatory region 223960	740 bp distal