rs48313774 SNP Detail

Summary

• ID
  rs48313774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89098976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CAGGAAAGCG CCCCTTCTCC
  R
  TGTAAGTACC CTTCCTATAT ATTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135473837	ENSMUSSNP4825795	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320836723	CHEV_3_88995591	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48313774					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89098976 () rs orientation: forward

Symbol	Name	Function Class
Rr367465	regulatory region 367465	982 bp downstream
Rr579971	regulatory region 579971	744 bp distal
Rr579972	regulatory region 579972	1854 bp proximal