rs48314190 SNP Detail

Summary

• ID
  rs48314190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45027148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCACCC CTACTAACTG
  CCATGGGGCA TAATCTCCTG CCAATCACTT CCATGTCCAC TGGTTGTAGG ATAGCCATGT
  TATCCACAAG ACTTTTACAA AGTGCTAGAG CTGAGGACAC CCCAACAAGA ACCTTCTTGA
  CTCCCAAGCT GTCCATCTTA CCTGAGGCTT GAGGTTTTAT TTAGGCTAGT CCACTACCAA
  Y
  TTGTACTTTG AGCATAAAGT CCAAAGTGTG AACTCATAGA AAAGCTGAAA GAAGCTAGGT
  TTGGGATTGT ACCCCTTTAA TCTCATACTT TGGAGCAGAG GCAGCCTGGC CCACAGTGAG
  CTTCAGGTCA GCCACTACGT GGTGAGACGA AACAAAACAA ACCCAGAAGT TGGAACACCT
  GCCACACCTA GATTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61003635	NES16116981	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	T	T	T	C	T	C
ss149134226	ENSMUSSNP3264646	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs48314190					SNP	T	C	T	T	T	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003635	NES16116981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45027148 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	within coordinates
Tssr66520	transcription start site region 66520	527 bp downstream