rs48314928 SNP Detail

Summary

• ID
  rs48314928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13821101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCTGC CTGTACTTCC
  AGCTTTGGGG AATCAGATGT CTGCTTTTGG CCTTCACAGG CTCCTGCACA CATGATACAC
  TAGTCATATG CATGTATTTA ATTAATTAAT TTCTTTTTTT AAATTGCTGT CCTCTGATGG
  GGTATTGTTC TTATAGTTTT GTAAACTTAA TTTTCTTTAG TTCTTTGAAT ATTATCCTAG
  Y
  TTATTTAAAG TATTGTCTTT TAAGTCCAGT ATCTCCTCTT CTGCTAGGAC GGTTTCTGTT
  GACTGCTTTT TTTTTTTCCT GTTCGGACTG TATTTAGAGT TAGAAAAAAG TGAATGATAG
  GATCTAAAGC TGACAAATTT CTATTGCATT ACAAAGTTTC AAGCGTTGAA TATGTGAAAT
  TTTCAAATCT TTTCAGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148685477	ENSMUSSNP4505125	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss322509736	CHEV_8_13771101	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48314928					SNP	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13821101 () rs orientation: forward

Symbol	Name	Function Class
Cdc16	CDC16 cell division cycle 16	within coordinates
Gm46032	predicted gene, 46032	within coordinates
Tssr76425	transcription start site region 76425	265 bp upstream