rs48315854 SNP Detail

Summary

• ID
  rs48315854
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36391438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACATGGAAG TAATCCTTCA TTTGTTCATA TTTTTTGTAA
  TGCACTTCAG CTTTCTAGGC ACCATGCGTA GCTCATCCAG TCTGATACTG TGACTGCTTT
  C
  TAAGTCATTG TTTAATAAAT TATGCACCTA CAGATATATG CAACTGCCTT CCTTTCATGT
  TGCAAGGTGA TTCCATTTCA ATACTTCATT TATTCTTCTT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148872032	ENSMUSSNP1595890	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48315854					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36391438 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	298 bp upstream
Rr279014	regulatory region 279014	1932 bp proximal
Rr283246	regulatory region 283246	239 bp distal