rs48316106 SNP Detail

Summary

• ID
  rs48316106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55659828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGCCTTG ACCGTACAGA
  GAGTACAAGC CGTTTTTGTG CCTCAGTTCA AACCCTTGCT CTGCAGTGGA CTTACTGAAT
  GGGCTCCTCC AGCCCACCAA GCTCTGTCAC TTGGGGAAAC AGGATGACAA CTGCTATTCC
  TTGAATAACT GGAATTAAAG TTACATCCTG CTGGGGACCT GGCTCCACAG GCTGCTCTCC
  Y
  AGCTAAGTAA GATACTTCTT GGAGACATCA GCCTCCAATA CCGAAGGAAC AGGCTCCCCC
  TTGTCACTCA CAGATGGCTT GGTGGGAGAG CATCAAATAC CATGTCAAAG TAGGGAAGTT
  GGGAGTGCCT CTCTACTCTC CACCTAGTTG GGAGTCCTGG TAGTTAAGTG TCCATTTGGA
  CCTGGATACT CCTGCCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149037266	ENSMUSSNP2576435	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48316106					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55659828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5676	CpG island 5676	469 bp proximal
Pdlim7	PDZ and LIM domain 7	within coordinates
Rr281453	regulatory region 281453	within coordinates
Tssr122709	transcription start site region 122709	324 bp downstream
Tssr122710	transcription start site region 122710	342 bp downstream
Tssr122711	transcription start site region 122711	1412 bp downstream