rs48316619 SNP Detail

Summary

• ID
  rs48316619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101315550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAGGCAGGT GGGTCTCTTG AGTTCCAGGA CAGCCAGGGA
  TATAAAATGA GATCTTATCC AAGAAAACTA AAACAAGTAC ACACAACAAA CAACCACCAT
  Y
  AATAATAATA ATAATAATAA TAATAATAAT AATAATAAAA CAAAAAACAG ACAGTCCATA
  AGCTAAGTAG GACGGGCCTG GCTCCTAGTC CGAGGCTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145557457	ENSMUSSNP2405103	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48316619					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101315550 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	within coordinates
Rr381220	regulatory region 381220	486 bp upstream
Rr652446	regulatory region 652446	163 bp proximal
Rr652447	regulatory region 652447	418 bp proximal