rs48316833 SNP Detail

Summary

• ID
  rs48316833
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71962544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGCTATAT AAAACTGAAT TATTGTATAT
  TCTTTAGTCT TTCCCTACAG GTTCCATATT AATTCATTCA GATGTATACA TTTGCTGTGT
  CTTGGTTTGG GTTCAGCGTT TTGTAACTAT CCCATGCCTG CTTAGACAGA ACCATAGACC
  M
  GTCACCCTTG AATTCTTGAG TGGAATGCTT ATTGTACTTA ACAGGCTAAC TACGTTTCAA
  ATCTTCTACA TGGCACTGAC TTTTTCCCTA CCATGCACAA ATTACAGCTA GATGTGCAAC
  AGTAAAATCT TTTGCCATAA TGGATTTTAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144647978	ENSMUSSNP5856662	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss319787558	CHEV_1_71969959	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48316833					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71962544 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	1189 bp downstream