rs48317209 SNP Detail

Summary

• ID
  rs48317209
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24569613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACAACAGG CACATACTGC CATTTAAGTG CCAGGCATGA
  TGATAATCCC TTAAGCATGC ACTTTTCTCA TTTCACTTTG GAAAAAAAGT GGTGGTTGTG
  A
  GGGAACCGCA ACCTTTGAAT ACGCTATTAC TACCATTTCA ATTTTAGGAA TGAGAAATTA
  AGATTCTGGA AAATACAATG ACTTGAATAC ACTAGTGAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351404	ENSMUSSNP359334	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325330808	CHEV_17_24487584	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48317209					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24569613 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	1384 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	184 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	1704 bp distal
Rr405082	regulatory region 405082	1079 bp upstream
Rr523280	regulatory region 523280	230 bp proximal
Rr523281	regulatory region 523281	380 bp proximal
Rr523282	regulatory region 523282	580 bp proximal
Rr523283	regulatory region 523283	1265 bp proximal
Rr523284	regulatory region 523284	1418 bp proximal
Rr523285	regulatory region 523285	1468 bp proximal
Tssr143021	transcription start site region 143021	1298 bp upstream
Tssr143022	transcription start site region 143022	1315 bp upstream
Tssr143023	transcription start site region 143023	1378 bp upstream
Tssr143024	transcription start site region 143024	1398 bp upstream
Tssr146725	transcription start site region 146725	414 bp downstream
Tssr146726	transcription start site region 146726	433 bp downstream