rs48317363 SNP Detail

Summary

• ID
  rs48317363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32245131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT CATTCTTTGG CTCATGGCCA
  Y
  GCCCTGCATC CAGTAATACA CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss131933821	ENSMUSSNP2760281	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323630333	CHEV_11_32195131	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48317363					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32245131 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	within coordinates
Gm74521	predicted gene, 74521	1357 bp downstream
Hba-a2	hemoglobin alpha, adult chain 2	1358 bp upstream
Rr444566	regulatory region 444566	1760 bp distal
Rr444567	regulatory region 444567	1305 bp distal
Rr444568	regulatory region 444568	1004 bp distal
Rr444569	regulatory region 444569	868 bp proximal
Tssr100842	transcription start site region 100842	1360 bp upstream
Tssr100843	transcription start site region 100843	1996 bp upstream