rs48318490 SNP Detail

Summary

• ID
  rs48318490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53223771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTACAAGG AACTGGGTTC
  CACCTTCTCA TTTTATAGAA GGCCCAAAGA AATTAAGTGC CAGGTCAAAA GACACCTGAG
  TTCTCACCAG ACTAAATTCC CAAAGAGTCT ACTAAAAGTC ATAGAAATGA GTACAGTCCC
  ATGTTTACTA ACATTCATAG CAACTAGAAA TAAAACCAGC CTAGAGATCC ATCCACCTGT
  R
  AGCATGTAAG AAAATGTGGT ACATATACAC GATGCAACTT TATTTGGCCA TAAAGGAAAA
  TTAAATTGTG ACTTCTGCAG AAAACCAAAT GGGACTTGAA ATCACTACAT TAATCAAAGC
  ATGCCAGACC CGGGAAGGCA AATGCGTCAT GTTTTCTCTC ATATTGTTAA TCTAGATTTG
  AAATCTTGTT CATGTGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147113490	ENSMUSSNP1977407	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48318490					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53223771 () rs orientation: forward

Symbol	Name	Function Class
Cep85l	centrosomal protein 85-like	within coordinates
Pln	phospholamban	1676 bp downstream
Tssr97581	transcription start site region 97581	834 bp downstream
Tssr97582	transcription start site region 97582	954 bp downstream