rs48318875 SNP Detail

Summary

• ID
  rs48318875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24533159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTGCCTTCAG ACTGAGGGCT TCTTAATTAA AACACAGGGC
  TAATACACGA GGTTAGTGAC CTTTCAAGCC ATCAAAAAAG AGCAGGCTAG GACCCCACAG
  R
  CAAGGGGCAA CAGGGGGGTG GCTGTTACTC CATAGGACCC ATCTCTGTGC CTGAGCACAG
  GCCTGAGGAG CTATACTGGA CCACCACAGA CAGCAGTGAC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148091664	ENSMUSSNP4395955	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48318875					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24533159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15592	CpG island 15592	1401 bp proximal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50305	transcription start site region 50305	1110 bp downstream
Tssr50306	transcription start site region 50306	1395 bp downstream