rs48319416 SNP Detail

Summary

• ID
  rs48319416
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79894546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCTAGG TTCCGTTCCC
  ATCAGTCCCA AAGGTGGCTC ACAGCCATGT ATAACTCCAG TCCCAAAGGA TCTGACATTC
  TCTTCTGACT TACACAGGCA CCAAACAAGA ATGCGGTAAA AACTTATACA CATAAAATAC
  AAACATTTGT GAATTTTTAA GAATGAAAAA CCTTTTGTTA CTGTGTAACC GGTTACTTTA
  S
  CAAATTCTCA GTACTACAGA GTAAGCAGAT ATTCATATCC TTGTACTATA GGCTTAGATT
  TTTCAAAACC TACTTTGTAT TCTTGAATGC TTCAACATCC TTCTAGTCCA CCTATCAGAA
  GTAGGGGGGA TAAAAAGGTT AGTAGGAAAT GAGGGCTGTG GACCTGTTTA GAAGTAGTTC
  TTTGGGGAGA TTGGGAAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61024261	NES16111196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48319416					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024261	NES16111196	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79894546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	1316 bp proximal
Gm73873	predicted gene, 73873	within coordinates
Rr158192	regulatory region 158192	1546 bp distal
Rr165873	regulatory region 165873	55 bp proximal
Rr168083	regulatory region 168083	1054 bp proximal
Rr400401	regulatory region 400401	1397 bp upstream
Tssr2310	transcription start site region 2310	1561 bp upstream
Tssr67422	transcription start site region 67422	1571 bp upstream
Tssr67423	transcription start site region 67423	1577 bp upstream
Tssr67424	transcription start site region 67424	1632 bp upstream
Tssr67425	transcription start site region 67425	1649 bp upstream
Tssr67426	transcription start site region 67426	1708 bp upstream
Tssr67427	transcription start site region 67427	1731 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	1578 bp upstream