rs48319788 SNP Detail

Summary

• ID
  rs48319788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38602446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGGAAT GGACCAGTAA
  CCATTGCATG TGTCATGGAA ATAGAGTGTT GTGGTCAGAA GCCAATTGTA CTTGATTGAT
  AGCAGCTGAA AGTGTGACAA TTCAAGCATC AGGCACAGGT TTCTCTTCTG AGACTTGTCA
  TGAGTTAGAA CTGTATAATG GGTGAGTATC GGGCAGGAGT TCTAGAGGAT GATCTTGCAG
  R
  CTGATGAGTC AGAGCAGAGT AAGCCAAAGA AAAGGAGAGG AACTTGGAGT GGAAGCCAGG
  GTCTTGGGTG TGGGGCAGTC TGTCTGTCTT GGCTGCAGAT AAACGTGGGT GGATGGGCAG
  ATTGCTGGGA GAGAGAAAAA ATGTATCCCA ACTGATTGCT TCTATATTCT TAAGACATGA
  GGTGTAGCCA TGACTGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60446809	NES16430282	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48319788					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446809	NES16430282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38602446 () rs orientation: forward

Symbol	Name	Function Class
Rr515900	regulatory region 515900	299 bp distal
Tssr141113	transcription start site region 141113	904 bp upstream
Tssr141114	transcription start site region 141114	1429 bp downstream
Tssr141115	transcription start site region 141115	1518 bp downstream
Tssr141116	transcription start site region 141116	1636 bp downstream
Tssr141117	transcription start site region 141117	1776 bp downstream
Upk1b	uroplakin 1B	within coordinates