rs48320445 SNP Detail

Summary

• ID
  rs48320445
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52153130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGAAGT AGTGGGCCAG
  CACACACAGA CAGAAAACAA ACAAACAAAC AAACAAAAAA ACCCAACTTC CATGATATTT
  AGTTAGGTTT TTGTTTTGTC TTATTTGGGC ATTTTGCACT ATTATTATTA TTATTATTAT
  TATTATTATT ATTATTAGTG TGTGCGCACA TGCATGTTTG AAAGAGAAAG GGTGAGGAGG
  R
  ACCTCATAAA AGATAAAAGT TGGGTGGGTA GAGAGGGGGA GAGGATCTGA AGGAAGTTTC
  CAAACACATG AACACACTCT CTATGGCAAC ACAAGTCGAC TGCACTAGCA GCTGAAGCAC
  GGTCCATGTG CTCAGGATGG TGTGGGCCTA TACCAAGCTT CCCTCCTAGC AAGTCAGACA
  ATCTCTAGGA GTTGGTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215772	NES15721494	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48320445					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215772	NES15721494	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52153130 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Gm32597	predicted gene, 32597	within coordinates
Gm60235	predicted gene, 60235	1256 bp upstream
Rr516984	regulatory region 516984	767 bp proximal
Tssr141426	transcription start site region 141426	304 bp upstream
Tssr141427	transcription start site region 141427	385 bp downstream