rs48320820 SNP Detail

Summary

• ID
  rs48320820
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52467828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGCCATT ACTATCCAGT TGTTGTGCCT
  TCTCTGTGGC AGATATGCAA ACCCTGGCAT CCTCACTTAT ACCTATGTGA ATTTTCCTAA
  AGTCCCATTG GGGACTTGAT ATTTCATAGC TGTCCCCATC TGCTTCAAAT CTTGCCTATT
  W
  GTTGGGTTTT GCTAAGAGGG TCCATTTTGG CATACAATGA GACAGGCCTC GTTGATCGTG
  GTAAATCACA TCTCTATCAC CAAAAGCTCA GTGTGAGGTA CAGAAGATGC AGCATGCTCA
  CCTTTCTGTT TTGCCTTTGA TTGCAAGTCC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60733159	NES16376324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	T	A		T
ss319720180	CHEV_1_52485513	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48320820					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60733159	NES16376324	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52467828 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	within coordinates
Rr410861	regulatory region 410861	281 bp distal
Rr410862	regulatory region 410862	364 bp proximal
Rr410863	regulatory region 410863	1653 bp proximal